I just finished my endmill and tap reorganization/toolbox consolidation and found the top of my workbench again. I view organization (for me anyway) as a constant evolution of throwing cheap, quick and dirty solutions at the wall, just barely adequate for the job for a while until more accumulation of tools/material/parts etc bust the dam wide open again. Every once in a while it'll become a big enough problem that I'll have to put projects on hold, and make IT the project for a while until I come up with a full assed solution to the problem. I've never been a naturally organized/neat and orderly person, it takes effort to stay this way, but only in the past couple years have I found it worthwhile to do. I have a very visual/photographic memory and remember where everything is that way. Keeping that in mind, I like having things out in the open when I can see them, and remember they exist. Well organized drawers are not ideal for that but a necessary evil to keep things clean.
I get the aversion to neat shops and having things organized, but for me there is a baseline level of organization that must be maintained in order to actually be able to get anything done in any reasonable and efficient manner. If that takes a bit of time to maintain, then so be it. It'll pay dividends on every future project. DURING projects on the other hand, it generally looks like a bomb went off, but I know where every part and tool is under all that chaos.
. At the end of a job though, everything must go back home. If it doesn't have a home, that's when the chaos starts.......
Making homes for things is where the cheap, quick and dirty philosophy comes from. OSB walls, cheap shelf brackets, and scraps of plywood make quick and dirty shelves that you can move around as needed. Various sized containers, and boxes hold projects and can live on those shelves. Jamming a shelf up on a wall somewhere to get stuff off a bench, or the floor takes at best 5 minutes, and the pay off is immediate. My shop looks like a patchwork quilt of half assed storage solutions. Because it is. They were quick. They were cheap, and most importantly they're done (for now). Perfection is the enemy of completion.