Robin Renzetti in a recent video mentioned again that “everything is rubber” referring to how easy it is for materials to bend and deform. That fact can not be over stressed. Even seemingly very stout pieces of CI, or steel will deform under surprisingly small forces. Case in point: on my SM 1340 I had spent a lot of time fitting the compound onto the cross slide and get a super smooth operation over the full range of travel. But every time I had the BXA size tool post in a certain spot, the compound would be smooth for about 2/3rd of its range and then bind up (still move, but not as freely). I lived with that for years. Then one day I decided: I have a surface grinder, why don’t I grind the TOP of the compound (mostly to make it look nice and practise my grinding on CI). The grind finish was/is not the best, but it reduced the length of the “bind-up” to about 1/5th of travel. So I was happy. Another few years passed and then I got fed up again and revisited the problem. Noticed that depending how tight the tool post nut was I could get the compound to move freely through the full range. The difference between binding and free was maybe 3*-5* of angle on the spanner (ie, very little). So off came the tool post. It was factory ground on the bottom, so I had left it for good thinking that they knew what they were doing. Ah, what the heck, I’ll “dust it off on the surface grinder”. Took about 20 min. to grind the bottom. Seemed pretty flat as the wheel traversed I had contact all the way across. But, from the sparks, I could tell that in the center there was a very shallow ”dish” about 1.5” diameter. So I ground that out with a light second pass and a cleanup pass. Put the TP back on the lathe and tightened down. Now i can put the TP in any orientation on the compound, tighten as much (or little) and it no longer binds up anywhere.
my point: things will distort; easily!
back to your mill: those hold down bolts - make sure that they are barely snug; do not crank on them. You will bend your base on top of the wooden table. Lead screw: make sure the caps are spaced properly, that the nut is in the same plane and does not bend it in any way. As
@PeterT suggested, set your table and gib without the lead screw installed. It has to be a sliding fit and you have to be able to move the table by hand to set the gib tension. Then install the lead screw. On my BP, the table “floats” on the saddle when pushed by hand. Very little force required (it is sliding on way oil, not just WD40 though). I set the gib that way, with just a bit of ”drag”, as per the manual. As
@Tom O suggests, make sure the opposite surfaces are free from dings (I see that you have already checked numerous times, great). All surfaces must be clean (you mention preservative is still on parts of the machine). Clean all of it off. That stuff gets hard when dry and will give you grief if in the wrong area, even the thinnest film.
main thing: you are close to getting there. Be patient, don’t assume anything. I know you want to have it up and running and make chips - we are all rooting for you as well.